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Yulia D, 15.08.2006 14:16
картинка: biotech_113339.pngКомпания УниПро разрабатывает оригинальные программные продукты для биоинформатики, и интегрирует в них известные алгоритмы и сервисы. Мы открыты для сотрудничества с академическими, образовательными и коммерческими учреждениями (разработка специализированного и учебного ПО, расширения к существующим пакетам, адаптация алгоритмов для разных платформ, мультипроцессорных и многопоточных вычислений).

UGENE – свободно распространяемое ПО для анализа генетических и белковых последовательностей, дающее широкие возможности визуализации, анализа, аннотирования, индивидуальной настройки. Обеспечена мультиплатформенная поддержка. Оптимизация алгоритмов для параллельных вычислений и многопоточной работы позволяет эффективно использовать различные вычислительные ресурсы (multicore CPUs, GPU blocks, HPC clusters, grids).

Основные функции:
* Просмотр и анализ аннотированных геномных или белковых последовательностей.
* Визуализация хроматограмм.
* Поиск ORFs (открытых рамок считывания)
* Интеграция с поисковыми запросами к базам NCBI
* Множественное выравнивание с адаптированными версиями алгоритма MUSCLE
* Интерфейс для поиска HMM профилей в адаптированном пакете HMMER
* 3D-визуализатор макромолекул для файлов в формате PDB
* Графический дизайнер для построения схем обработки данных (computational workflows)
* Поиск транскрипционных факторов связывания (TFBS) в ДНК

UniPro Genome Browser
– браузер для манипуляций с одной генетической последовательностью вплоть до размера генома с подробной визуализацией, масштабированием, поиском, и аннотированием. Набор плагинов делает доступными различные алгоритмы анализа.

UniPro DPView – инструмент для поиска гомологий путем сравнения нуклеотидных или пептидных последовательностей и создания выравниваний. Фильтрация и масштабируемость существенно ускоряют время вычислений.

/ Фирмы,  #113339  /
Россия, 630090, Новосибирск, пр-кт ак. Лаврентьева, 6/1
Тел.: +7 (383) 332-60-61
Факс: +7 (383) 330-29-60
Веб-адрес: http://ugene.unipro.ru
Специализация: Анализ последовательностей, Программы для мол. клонирования и ПЦР, Программы для Автоматизации и Анализа данных, Другое програмное обеспечение
География деятельности: по всему миру
V Denis, 16.08.2006 09:53
Есть хорошая альтернатива - межинститутский ЦКП: секвенирование ДНК. http://sequest.niboch.nsc.ru/
Но альтернативы это здорово! Удачи вам!
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